Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 AC012414.1-201ENST00000556676 535 ntBASIC21.75■■□□□ 1.07
PCDH9Q9HC56 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 AC019069.1-201ENST00000610008 1333 ntBASIC21.75■■□□□ 1.07
PCDH9Q9HC56 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDH9Q9HC56 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 AL354811.1-201ENST00000610286 706 ntBASIC21.74■■□□□ 1.07
PCDH9Q9HC56 AL358852.1-201ENST00000623174 1268 ntBASIC21.74■■□□□ 1.07
PCDH9Q9HC56 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDH9Q9HC56 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.73■■□□□ 1.07
PCDH9Q9HC56 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDH9Q9HC56 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDH9Q9HC56 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDH9Q9HC56 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
PCDH9Q9HC56 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDH9Q9HC56 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms