Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 TERF1P5-201ENST00000477545 1207 ntBASIC30.74■■■□□ 2.51
SENP3Q9H4L4 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 AC142381.4-202ENST00000563973 229 ntBASIC30.74■■■□□ 2.51
SENP3Q9H4L4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 AL022328.3-201ENST00000607943 679 ntBASIC30.73■■■□□ 2.51
SENP3Q9H4L4 AP003108.4-201ENST00000623917 878 ntBASIC30.73■■■□□ 2.51
SENP3Q9H4L4 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3Q9H4L4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 AC138907.5-202ENST00000569484 235 ntBASIC30.72■■■□□ 2.51
SENP3Q9H4L4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3Q9H4L4 BX276092.2-201ENST00000417668 665 ntBASIC30.71■■■□□ 2.51
SENP3Q9H4L4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 AC083880.1-201ENST00000608266 535 ntBASIC30.71■■■□□ 2.51
SENP3Q9H4L4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3Q9H4L4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 RN7SL121P-201ENST00000584223 273 ntBASIC30.7■■■□□ 2.51
SENP3Q9H4L4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
SENP3Q9H4L4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
SENP3Q9H4L4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
SENP3Q9H4L4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 AC073575.2-201ENST00000614212 627 ntBASIC30.69■■■□□ 2.5
SENP3Q9H4L4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3Q9H4L4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 AC092118.2-201ENST00000613495 667 ntBASIC30.68■■■□□ 2.5
SENP3Q9H4L4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 AC020763.2-201ENST00000623155 1255 ntBASIC30.68■■■□□ 2.5
SENP3Q9H4L4 AC013268.1-206ENST00000638368 961 ntBASIC30.68■■■□□ 2.5
SENP3Q9H4L4 AC112229.1-201ENST00000639295 961 ntBASIC30.68■■■□□ 2.5
SENP3Q9H4L4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3Q9H4L4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 LINC01960-201ENST00000563759 1884 ntBASIC30.67■■■□□ 2.5
SENP3Q9H4L4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3Q9H4L4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 ESRRAP1-201ENST00000400596 1257 ntBASIC30.66■■■□□ 2.5
SENP3Q9H4L4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 AC082651.2-201ENST00000496833 166 ntBASIC30.66■■■□□ 2.5
SENP3Q9H4L4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3Q9H4L4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC30.65■■■□□ 2.5
SENP3Q9H4L4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SENP3Q9H4L4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms