Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC35.56■■■■□ 3.28
IFT140Q96RY7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
IFT140Q96RY7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC35.55■■■■□ 3.28
IFT140Q96RY7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC35.55■■■■□ 3.28
IFT140Q96RY7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
IFT140Q96RY7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC35.55■■■■□ 3.28
IFT140Q96RY7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC35.54■■■■□ 3.28
IFT140Q96RY7 AC133561.5-201ENST00000635547 218 ntBASIC35.54■■■■□ 3.28
IFT140Q96RY7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
IFT140Q96RY7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC35.53■■■■□ 3.28
IFT140Q96RY7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
IFT140Q96RY7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
IFT140Q96RY7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC35.53■■■■□ 3.28
IFT140Q96RY7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC35.53■■■■□ 3.28
IFT140Q96RY7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC35.53■■■■□ 3.28
IFT140Q96RY7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC35.52■■■■□ 3.28
IFT140Q96RY7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
IFT140Q96RY7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC35.52■■■■□ 3.28
IFT140Q96RY7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
IFT140Q96RY7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC35.52■■■■□ 3.28
IFT140Q96RY7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
IFT140Q96RY7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC35.51■■■■□ 3.28
IFT140Q96RY7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC35.51■■■■□ 3.28
IFT140Q96RY7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
IFT140Q96RY7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
IFT140Q96RY7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC35.5■■■■□ 3.27
IFT140Q96RY7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
IFT140Q96RY7 POM121L13P-201ENST00000422362 380 ntBASIC35.5■■■■□ 3.27
IFT140Q96RY7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC35.5■■■■□ 3.27
IFT140Q96RY7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC35.5■■■■□ 3.27
IFT140Q96RY7 OR2A1-AS1-207ENST00000486094 819 ntBASIC35.5■■■■□ 3.27
IFT140Q96RY7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
IFT140Q96RY7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC35.5■■■■□ 3.27
IFT140Q96RY7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC35.5■■■■□ 3.27
IFT140Q96RY7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 AL589743.5-201ENST00000616611 1050 ntBASIC35.49■■■■□ 3.27
IFT140Q96RY7 KRT17P2-201ENST00000300992 1314 ntBASIC35.49■■■■□ 3.27
IFT140Q96RY7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC35.49■■■■□ 3.27
IFT140Q96RY7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC35.49■■■■□ 3.27
IFT140Q96RY7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC35.49■■■■□ 3.27
IFT140Q96RY7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC35.49■■■■□ 3.27
IFT140Q96RY7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
IFT140Q96RY7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC35.48■■■■□ 3.27
IFT140Q96RY7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC35.48■■■■□ 3.27
IFT140Q96RY7 AL049637.2-201ENST00000641778 930 ntBASIC35.48■■■■□ 3.27
IFT140Q96RY7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC35.48■■■■□ 3.27
IFT140Q96RY7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
IFT140Q96RY7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
IFT140Q96RY7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
IFT140Q96RY7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC35.48■■■■□ 3.27
IFT140Q96RY7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
IFT140Q96RY7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC35.48■■■■□ 3.27
IFT140Q96RY7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC35.47■■■■□ 3.27
IFT140Q96RY7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC35.47■■■■□ 3.27
IFT140Q96RY7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC35.47■■■■□ 3.27
IFT140Q96RY7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
IFT140Q96RY7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
IFT140Q96RY7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC35.47■■■■□ 3.27
IFT140Q96RY7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC35.47■■■■□ 3.27
IFT140Q96RY7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
IFT140Q96RY7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC35.47■■■■□ 3.27
IFT140Q96RY7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC35.46■■■■□ 3.27
IFT140Q96RY7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
IFT140Q96RY7 AC091799.1-201ENST00000422823 811 ntBASIC35.46■■■■□ 3.27
IFT140Q96RY7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
IFT140Q96RY7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC35.46■■■■□ 3.27
IFT140Q96RY7 AC004812.2-201ENST00000611079 2094 ntBASIC35.45■■■■□ 3.27
IFT140Q96RY7 AC061975.6-201ENST00000579045 1553 ntBASIC35.45■■■■□ 3.27
IFT140Q96RY7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC35.45■■■■□ 3.27
IFT140Q96RY7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC35.45■■■■□ 3.27
IFT140Q96RY7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC35.45■■■■□ 3.26
IFT140Q96RY7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.26
IFT140Q96RY7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
IFT140Q96RY7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
IFT140Q96RY7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
IFT140Q96RY7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC35.44■■■■□ 3.26
IFT140Q96RY7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC35.44■■■■□ 3.26
IFT140Q96RY7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
IFT140Q96RY7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC35.44■■■■□ 3.26
Retrieved 100 of 98,524 protein–RNA pairs in 189.6 ms