Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 AL591742.1-201ENST00000604433 565 ntBASIC20.59■□□□□ 0.89
LMX1AQ8TE12 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.59■□□□□ 0.89
LMX1AQ8TE12 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 AL512625.2-201ENST00000417533 625 ntBASIC20.58■□□□□ 0.89
LMX1AQ8TE12 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 MIR4651-201ENST00000582622 73 ntBASIC20.58■□□□□ 0.89
LMX1AQ8TE12 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LMX1AQ8TE12 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1AQ8TE12 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.58■□□□□ 0.88
LMX1AQ8TE12 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1AQ8TE12 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1AQ8TE12 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1AQ8TE12 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 BX276092.2-201ENST00000417668 665 ntBASIC20.57■□□□□ 0.88
LMX1AQ8TE12 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.57■□□□□ 0.88
LMX1AQ8TE12 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 AC127496.7-201ENST00000625110 1798 ntBASIC20.57■□□□□ 0.88
LMX1AQ8TE12 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.57■□□□□ 0.88
LMX1AQ8TE12 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1AQ8TE12 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 AC026471.6-201ENST00000622954 1905 ntBASIC20.55■□□□□ 0.88
LMX1AQ8TE12 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 FAM201B-201ENST00000458407 597 ntBASIC20.55■□□□□ 0.88
LMX1AQ8TE12 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.55■□□□□ 0.88
LMX1AQ8TE12 AC243732.1-201ENST00000612648 864 ntBASIC20.55■□□□□ 0.88
LMX1AQ8TE12 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms