Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 AC068338.2-201ENST00000563278 1430 ntBASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 MIR4758-201ENST00000577688 71 ntBASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.18■□□□□ 0.98
HDDC3Q8N4P3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 AC007322.4-201ENST00000509611 723 ntBASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 ITM2C-210ENST00000620962 501 ntBASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 AC061975.6-201ENST00000579045 1553 ntBASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HDDC3Q8N4P3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 KRT16P2-201ENST00000414673 1423 ntBASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 CYP2T1P-201ENST00000432607 1285 ntBASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 RNA5SP413-201ENST00000516373 109 ntBASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 AC026471.6-201ENST00000622954 1905 ntBASIC21.16■□□□□ 0.98
HDDC3Q8N4P3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
HDDC3Q8N4P3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDDC3Q8N4P3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms