Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 AL034346.1-201ENST00000568244 1277 ntBASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLIP4Q8N3C7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 PBX2P1-201ENST00000493219 1291 ntBASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 AC126544.1-201ENST00000580842 1059 ntBASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 SMUG1P1-201ENST00000590640 811 ntBASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 AC008764.7-201ENST00000593779 1081 ntBASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 AC003102.1-202ENST00000563394 1796 ntBASIC19.65■□□□□ 0.74
CLIP4Q8N3C7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.64■□□□□ 0.74
CLIP4Q8N3C7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.64■□□□□ 0.74
CLIP4Q8N3C7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 FEM1AP4-201ENST00000443167 1987 ntBASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.64■□□□□ 0.73
CLIP4Q8N3C7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLIP4Q8N3C7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms