Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 AC133041.1-202ENST00000642053 222 ntBASIC22.8■■□□□ 1.24
VPS52Q8N1B4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 AC013268.1-206ENST00000638368 961 ntBASIC22.79■■□□□ 1.24
VPS52Q8N1B4 AC112229.1-201ENST00000639295 961 ntBASIC22.79■■□□□ 1.24
VPS52Q8N1B4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
VPS52Q8N1B4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 TERF1P5-201ENST00000477545 1207 ntBASIC22.78■■□□□ 1.24
VPS52Q8N1B4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 EEF1DP3-203ENST00000566025 782 ntBASIC22.78■■□□□ 1.24
VPS52Q8N1B4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 SLC7A5P1-201ENST00000568957 537 ntBASIC22.78■■□□□ 1.24
VPS52Q8N1B4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
VPS52Q8N1B4 AP006587.3-201ENST00000525742 1516 ntBASIC22.77■■□□□ 1.24
VPS52Q8N1B4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.77■■□□□ 1.24
VPS52Q8N1B4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 AC053503.5-201ENST00000601508 636 ntBASIC22.77■■□□□ 1.24
VPS52Q8N1B4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS52Q8N1B4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
VPS52Q8N1B4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 AC073210.2-201ENST00000430369 194 ntBASIC22.76■■□□□ 1.23
VPS52Q8N1B4 MIR4651-201ENST00000582622 73 ntBASIC22.76■■□□□ 1.23
VPS52Q8N1B4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 GUSBP5-202ENST00000510805 1989 ntBASIC22.76■■□□□ 1.23
VPS52Q8N1B4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
VPS52Q8N1B4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 AC098934.4-201ENST00000564127 592 ntBASIC22.75■■□□□ 1.23
VPS52Q8N1B4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
VPS52Q8N1B4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 AC068338.2-201ENST00000563278 1430 ntBASIC22.74■■□□□ 1.23
VPS52Q8N1B4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
VPS52Q8N1B4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.74■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms