Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 AL157400.5-201ENST00000507624 621 ntBASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 AL032819.2-201ENST00000624543 2162 ntBASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28AQ8IWP9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 GABARAPL3-202ENST00000624044 1851 ntBASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 GPX1-201ENST00000419349 1106 ntBASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 AC092296.2-201ENST00000589470 999 ntBASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC28AQ8IWP9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 AC090340.1-201ENST00000620778 4980 ntBASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
CCDC28AQ8IWP9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 ALDH1A3-203ENST00000557963 1670 ntBASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28AQ8IWP9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28AQ8IWP9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms