Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 AC079140.4-201ENST00000507448 529 ntBASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.25■■□□□ 1.47
SH3RF1Q7Z6J0 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 AC068587.7-201ENST00000641602 218 ntBASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SH3RF1Q7Z6J0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 AC069152.1-201ENST00000438030 544 ntBASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 AC093827.2-201ENST00000512654 315 ntBASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 DUX4L16-201ENST00000555130 1264 ntBASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 DET1-205ENST00000558413 583 ntTSL 4 BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
SH3RF1Q7Z6J0 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.22■■□□□ 1.47
SH3RF1Q7Z6J0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 AC026310.3-201ENST00000625186 2373 ntBASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 AC008687.6-201ENST00000596318 630 ntBASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 AC005181.1-201ENST00000604782 1256 ntBASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SH3RF1Q7Z6J0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
SH3RF1Q7Z6J0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.2■■□□□ 1.47
SH3RF1Q7Z6J0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 FAM201B-201ENST00000458407 597 ntBASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.2■■□□□ 1.46
SH3RF1Q7Z6J0 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 AC231657.2-201ENST00000624556 255 ntBASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SH3RF1Q7Z6J0 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 AC026471.6-201ENST00000622954 1905 ntBASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 AC007322.1-201ENST00000426983 750 ntBASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms