Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13CQ709C8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13CQ709C8 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13CQ709C8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13CQ709C8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 AP003097.1-201ENST00000530657 1135 ntBASIC17.73■□□□□ 0.43
VPS13CQ709C8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 PKM-204ENST00000449901 2526 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 SNORA78-201ENST00000459373 127 ntBASIC17.73■□□□□ 0.43
VPS13CQ709C8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 AC016405.3-201ENST00000607710 860 ntBASIC17.73■□□□□ 0.43
VPS13CQ709C8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13CQ709C8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13CQ709C8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13CQ709C8 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13CQ709C8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13CQ709C8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13CQ709C8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS13CQ709C8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 RBM17P2-201ENST00000616397 1405 ntBASIC17.71■□□□□ 0.43
VPS13CQ709C8 AC026471.6-201ENST00000622954 1905 ntBASIC17.71■□□□□ 0.43
VPS13CQ709C8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
VPS13CQ709C8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.71■□□□□ 0.43
VPS13CQ709C8 AL359736.2-201ENST00000621992 437 ntBASIC17.71■□□□□ 0.43
VPS13CQ709C8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13CQ709C8 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13CQ709C8 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.71■□□□□ 0.43
VPS13CQ709C8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VPS13CQ709C8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 MIR718-201ENST00000390190 70 ntBASIC17.7■□□□□ 0.42
VPS13CQ709C8 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.7■□□□□ 0.42
VPS13CQ709C8 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.7■□□□□ 0.42
VPS13CQ709C8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13CQ709C8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13CQ709C8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13CQ709C8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS13CQ709C8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms