Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 AP003097.1-201ENST00000530657 1135 ntBASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS13DQ5THJ4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS13DQ5THJ4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 CYP2T3P-201ENST00000601990 817 ntBASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 BX088651.1-201ENST00000540551 451 ntBASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 AL591742.1-201ENST00000604433 565 ntBASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 AC100791.3-201ENST00000617619 330 ntBASIC14.32□□□□□ -0.12
VPS13DQ5THJ4 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS13DQ5THJ4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 TSPY15P-201ENST00000457163 923 ntBASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 NFE2L3P1-201ENST00000588207 1959 ntBASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 AC003102.1-202ENST00000563394 1796 ntBASIC14.3□□□□□ -0.12
VPS13DQ5THJ4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13DQ5THJ4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms