Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 GPX1P1-201ENST00000388829 606 ntBASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
CCDC144BQ3MJ40 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC144BQ3MJ40 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
CCDC144BQ3MJ40 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC144BQ3MJ40 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC144BQ3MJ40 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC144BQ3MJ40 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 ABHD17AP1-201ENST00000358206 933 ntBASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 AL050303.2-201ENST00000619798 666 ntBASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC144BQ3MJ40 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 DUX4L16-201ENST00000555130 1264 ntBASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 UBE2DNL-204ENST00000602536 740 ntBASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.41■■□□□ 1.5
CCDC144BQ3MJ40 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CCDC144BQ3MJ40 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.4■■□□□ 1.5
CCDC144BQ3MJ40 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC144BQ3MJ40 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC144BQ3MJ40 FAM99A-202ENST00000538190 1989 ntBASIC24.4■■□□□ 1.5
CCDC144BQ3MJ40 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms