Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.82■□□□□ 0.6
CLRN1P58418 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.82■□□□□ 0.6
CLRN1P58418 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLRN1P58418 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLRN1P58418 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.81■□□□□ 0.6
CLRN1P58418 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLRN1P58418 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.81■□□□□ 0.6
CLRN1P58418 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.81■□□□□ 0.6
CLRN1P58418 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.81■□□□□ 0.6
CLRN1P58418 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLRN1P58418 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.8■□□□□ 0.6
CLRN1P58418 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLRN1P58418 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.8■□□□□ 0.6
CLRN1P58418 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.8■□□□□ 0.6
CLRN1P58418 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.8■□□□□ 0.6
CLRN1P58418 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.8■□□□□ 0.6
CLRN1P58418 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.8■□□□□ 0.6
CLRN1P58418 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.8■□□□□ 0.6
CLRN1P58418 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLRN1P58418 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.79■□□□□ 0.6
CLRN1P58418 AL137060.1-201ENST00000618151 2648 ntBASIC18.79■□□□□ 0.6
CLRN1P58418 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CLRN1P58418 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CLRN1P58418 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLRN1P58418 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLRN1P58418 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLRN1P58418 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN1P58418 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN1P58418 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN1P58418 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.78■□□□□ 0.6
CLRN1P58418 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN1P58418 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.78■□□□□ 0.6
CLRN1P58418 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.78■□□□□ 0.6
CLRN1P58418 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CLRN1P58418 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLRN1P58418 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.77■□□□□ 0.6
CLRN1P58418 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CLRN1P58418 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CLRN1P58418 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.77■□□□□ 0.6
CLRN1P58418 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CLRN1P58418 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.77■□□□□ 0.6
CLRN1P58418 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.77■□□□□ 0.6
CLRN1P58418 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.77■□□□□ 0.6
CLRN1P58418 TPRG1LP1-201ENST00000598702 760 ntBASIC18.77■□□□□ 0.6
CLRN1P58418 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.77■□□□□ 0.6
CLRN1P58418 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLRN1P58418 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CLRN1P58418 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLRN1P58418 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLRN1P58418 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLRN1P58418 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.76■□□□□ 0.59
CLRN1P58418 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.76■□□□□ 0.59
CLRN1P58418 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.76■□□□□ 0.59
CLRN1P58418 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN1P58418 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CLRN1P58418 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN1P58418 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.76■□□□□ 0.59
CLRN1P58418 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.76■□□□□ 0.59
CLRN1P58418 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLRN1P58418 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN1P58418 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.76■□□□□ 0.59
CLRN1P58418 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN1P58418 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.76■□□□□ 0.59
CLRN1P58418 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN1P58418 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms