Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.28■■□□□ 1.32
PEX3P56589 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
PEX3P56589 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.28■■□□□ 1.32
PEX3P56589 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC23.28■■□□□ 1.32
PEX3P56589 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.28■■□□□ 1.32
PEX3P56589 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
PEX3P56589 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PEX3P56589 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
PEX3P56589 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.27■■□□□ 1.32
PEX3P56589 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 AC006015.1-201ENST00000429970 570 ntBASIC23.27■■□□□ 1.32
PEX3P56589 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PEX3P56589 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.27■■□□□ 1.32
PEX3P56589 AC061975.6-201ENST00000579045 1553 ntBASIC23.27■■□□□ 1.32
PEX3P56589 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PEX3P56589 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
PEX3P56589 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PEX3P56589 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.26■■□□□ 1.31
PEX3P56589 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PEX3P56589 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PEX3P56589 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.26■■□□□ 1.31
PEX3P56589 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.26■■□□□ 1.31
PEX3P56589 UBE2DNL-204ENST00000602536 740 ntBASIC23.26■■□□□ 1.31
PEX3P56589 AC008175.2-201ENST00000612840 297 ntBASIC23.26■■□□□ 1.31
PEX3P56589 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.26■■□□□ 1.31
PEX3P56589 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.26■■□□□ 1.31
PEX3P56589 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PEX3P56589 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
PEX3P56589 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
PEX3P56589 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
PEX3P56589 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.25■■□□□ 1.31
PEX3P56589 SLC7A5P2-201ENST00000553010 536 ntBASIC23.25■■□□□ 1.31
PEX3P56589 AL137784.2-201ENST00000607332 1000 ntBASIC23.25■■□□□ 1.31
PEX3P56589 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.25■■□□□ 1.31
PEX3P56589 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.25■■□□□ 1.31
PEX3P56589 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
PEX3P56589 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PEX3P56589 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.24■■□□□ 1.31
PEX3P56589 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.24■■□□□ 1.31
PEX3P56589 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.24■■□□□ 1.31
PEX3P56589 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.24■■□□□ 1.31
PEX3P56589 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 AC004911.1-201ENST00000416316 871 ntBASIC23.24■■□□□ 1.31
PEX3P56589 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.24■■□□□ 1.31
PEX3P56589 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.24■■□□□ 1.31
PEX3P56589 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.24■■□□□ 1.31
PEX3P56589 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.24■■□□□ 1.31
PEX3P56589 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PEX3P56589 AC244015.2-201ENST00000616358 1861 ntBASIC23.24■■□□□ 1.31
PEX3P56589 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
PEX3P56589 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.23■■□□□ 1.31
PEX3P56589 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.23■■□□□ 1.31
PEX3P56589 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.23■■□□□ 1.31
PEX3P56589 KRT18P20-201ENST00000548986 1279 ntBASIC23.23■■□□□ 1.31
PEX3P56589 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.23■■□□□ 1.31
PEX3P56589 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PEX3P56589 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.23■■□□□ 1.31
PEX3P56589 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms