Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
HMGCS2P54868 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
HMGCS2P54868 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HMGCS2P54868 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC24.5■■□□□ 1.51
HMGCS2P54868 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC24.5■■□□□ 1.51
HMGCS2P54868 OR2A1-AS1-201ENST00000462305 773 ntBASIC24.5■■□□□ 1.51
HMGCS2P54868 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC24.5■■□□□ 1.51
HMGCS2P54868 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.5■■□□□ 1.51
HMGCS2P54868 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
HMGCS2P54868 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC24.5■■□□□ 1.51
HMGCS2P54868 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.5■■□□□ 1.51
HMGCS2P54868 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
HMGCS2P54868 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
HMGCS2P54868 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.49■■□□□ 1.51
HMGCS2P54868 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HMGCS2P54868 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HMGCS2P54868 GAS7-202ENST00000396115 929 ntTSL 5 BASIC24.49■■□□□ 1.51
HMGCS2P54868 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC24.49■■□□□ 1.51
HMGCS2P54868 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGCS2P54868 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC24.49■■□□□ 1.51
HMGCS2P54868 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.49■■□□□ 1.51
HMGCS2P54868 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.49■■□□□ 1.51
HMGCS2P54868 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
HMGCS2P54868 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGCS2P54868 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HMGCS2P54868 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
HMGCS2P54868 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGCS2P54868 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGCS2P54868 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HMGCS2P54868 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC24.48■■□□□ 1.51
HMGCS2P54868 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGCS2P54868 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
HMGCS2P54868 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC24.48■■□□□ 1.51
HMGCS2P54868 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HMGCS2P54868 CD44-222ENST00000526025 1052 ntTSL 2 BASIC24.48■■□□□ 1.51
HMGCS2P54868 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
HMGCS2P54868 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGCS2P54868 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGCS2P54868 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
HMGCS2P54868 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGCS2P54868 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
HMGCS2P54868 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC24.47■■□□□ 1.51
HMGCS2P54868 INO80E-214ENST00000620599 515 ntTSL 2 BASIC24.47■■□□□ 1.51
HMGCS2P54868 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC24.46■■□□□ 1.51
HMGCS2P54868 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGCS2P54868 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.46■■□□□ 1.51
HMGCS2P54868 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC24.46■■□□□ 1.51
HMGCS2P54868 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGCS2P54868 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC24.46■■□□□ 1.51
HMGCS2P54868 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.46■■□□□ 1.51
HMGCS2P54868 MMAB-206ENST00000540016 945 ntTSL 3 BASIC24.46■■□□□ 1.51
HMGCS2P54868 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC24.46■■□□□ 1.51
HMGCS2P54868 AC006058.3-201ENST00000606217 1069 ntBASIC24.46■■□□□ 1.51
HMGCS2P54868 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGCS2P54868 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.46■■□□□ 1.51
HMGCS2P54868 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
HMGCS2P54868 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGCS2P54868 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGCS2P54868 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
HMGCS2P54868 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC24.45■■□□□ 1.5
HMGCS2P54868 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGCS2P54868 SERPINH1P1-201ENST00000419794 1249 ntBASIC24.45■■□□□ 1.5
HMGCS2P54868 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC24.45■■□□□ 1.5
HMGCS2P54868 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC24.45■■□□□ 1.5
HMGCS2P54868 IRX5-204ENST00000560154 879 ntTSL 5 BASIC24.45■■□□□ 1.5
HMGCS2P54868 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC24.45■■□□□ 1.5
HMGCS2P54868 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
HMGCS2P54868 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.44■■□□□ 1.5
HMGCS2P54868 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.44■■□□□ 1.5
HMGCS2P54868 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
HMGCS2P54868 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGCS2P54868 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
HMGCS2P54868 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC24.44■■□□□ 1.5
HMGCS2P54868 GCSHP5-201ENST00000443090 522 ntBASIC24.44■■□□□ 1.5
HMGCS2P54868 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC24.44■■□□□ 1.5
HMGCS2P54868 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGCS2P54868 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.44■■□□□ 1.5
HMGCS2P54868 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGCS2P54868 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
HMGCS2P54868 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
HMGCS2P54868 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGCS2P54868 AC092053.2-201ENST00000640557 1818 ntBASIC24.43■■□□□ 1.5
HMGCS2P54868 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.43■■□□□ 1.5
HMGCS2P54868 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
HMGCS2P54868 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
HMGCS2P54868 LSM12P1-201ENST00000411836 588 ntBASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms