Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC29.54■■■□□ 2.32
MSH6P52701 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC29.54■■■□□ 2.32
MSH6P52701 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH6P52701 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH6P52701 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
MSH6P52701 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH6P52701 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
MSH6P52701 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH6P52701 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH6P52701 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH6P52701 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH6P52701 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
MSH6P52701 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 TK2-213ENST00000563369 882 ntTSL 5 BASIC29.52■■■□□ 2.32
MSH6P52701 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC29.52■■■□□ 2.32
MSH6P52701 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
MSH6P52701 AC233702.5-201ENST00000584107 538 ntBASIC29.52■■■□□ 2.32
MSH6P52701 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
MSH6P52701 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC29.52■■■□□ 2.32
MSH6P52701 AC092368.3-202ENST00000574180 1591 ntBASIC29.52■■■□□ 2.32
MSH6P52701 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
MSH6P52701 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC29.52■■■□□ 2.32
MSH6P52701 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC29.52■■■□□ 2.32
MSH6P52701 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
MSH6P52701 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
MSH6P52701 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
MSH6P52701 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
MSH6P52701 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.51■■■□□ 2.31
MSH6P52701 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC29.51■■■□□ 2.31
MSH6P52701 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MSH6P52701 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC29.51■■■□□ 2.31
MSH6P52701 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
MSH6P52701 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
MSH6P52701 TSPY7P-201ENST00000431358 1114 ntBASIC29.5■■■□□ 2.31
MSH6P52701 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC29.5■■■□□ 2.31
MSH6P52701 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
MSH6P52701 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC29.5■■■□□ 2.31
MSH6P52701 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC29.5■■■□□ 2.31
MSH6P52701 AC133561.5-201ENST00000635547 218 ntBASIC29.5■■■□□ 2.31
MSH6P52701 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC29.5■■■□□ 2.31
MSH6P52701 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC29.5■■■□□ 2.31
MSH6P52701 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH6P52701 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH6P52701 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
MSH6P52701 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 KRT17P2-201ENST00000300992 1314 ntBASIC29.49■■■□□ 2.31
MSH6P52701 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC29.49■■■□□ 2.31
MSH6P52701 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH6P52701 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH6P52701 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC29.49■■■□□ 2.31
MSH6P52701 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH6P52701 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC29.48■■■□□ 2.31
MSH6P52701 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
MSH6P52701 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
MSH6P52701 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC29.48■■■□□ 2.31
MSH6P52701 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
MSH6P52701 RCN1P1-201ENST00000400413 996 ntBASIC29.48■■■□□ 2.31
MSH6P52701 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC29.48■■■□□ 2.31
MSH6P52701 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
MSH6P52701 REXO2-216ENST00000544196 452 ntTSL 3 BASIC29.48■■■□□ 2.31
MSH6P52701 SOX15-203ENST00000570788 1093 ntBASIC29.48■■■□□ 2.31
MSH6P52701 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC29.48■■■□□ 2.31
MSH6P52701 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
MSH6P52701 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
MSH6P52701 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.47■■■□□ 2.31
MSH6P52701 LINC00526-201ENST00000581067 1875 ntBASIC29.47■■■□□ 2.31
MSH6P52701 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.47■■■□□ 2.31
MSH6P52701 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC29.47■■■□□ 2.31
MSH6P52701 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
MSH6P52701 AC100791.3-201ENST00000617619 330 ntBASIC29.47■■■□□ 2.31
MSH6P52701 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.47■■■□□ 2.31
MSH6P52701 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH6P52701 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.46■■■□□ 2.31
MSH6P52701 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC29.46■■■□□ 2.31
MSH6P52701 AC087499.1-201ENST00000418141 1075 ntBASIC29.46■■■□□ 2.31
MSH6P52701 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC29.46■■■□□ 2.31
MSH6P52701 FAM21FP-204ENST00000608637 956 ntBASIC29.46■■■□□ 2.31
MSH6P52701 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
MSH6P52701 RPS2P55-201ENST00000397318 883 ntBASIC29.45■■■□□ 2.31
MSH6P52701 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.31
MSH6P52701 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC29.45■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms