Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 RSM19YNR037C 276 nt3.46□□□□□ -1.86
UPF3P48412 YBR053CYBR053C 1077 nt3.46□□□□□ -1.86
UPF3P48412 ALA1YOR335C 2877 nt3.45□□□□□ -1.86
UPF3P48412 LCB4YOR171C 1875 nt3.45□□□□□ -1.86
UPF3P48412 PEX5YDR244W 1839 nt3.45□□□□□ -1.86
UPF3P48412 SGN1YIR001C 753 nt3.45□□□□□ -1.86
UPF3P48412 MRP8YKL142W 660 nt3.45□□□□□ -1.86
UPF3P48412 YLL037WYLL037W 381 nt3.45□□□□□ -1.86
UPF3P48412 PFY1YOR122C 381 nt3.45□□□□□ -1.86
UPF3P48412 YPL168WYPL168W 1293 nt3.45□□□□□ -1.86
UPF3P48412 CIN2YPL241C 807 nt3.45□□□□□ -1.86
UPF3P48412 TFC1YBR123C 1950 nt3.45□□□□□ -1.86
UPF3P48412 ATP22YDR350C 2055 nt3.44□□□□□ -1.86
UPF3P48412 VPS33YLR396C 2076 nt3.44□□□□□ -1.86
UPF3P48412 YDR431WYDR431W 312 nt3.44□□□□□ -1.86
UPF3P48412 YHL048C-AYHL048C-A 135 nt3.44□□□□□ -1.86
UPF3P48412 ERG20YJL167W 1059 nt3.44□□□□□ -1.86
UPF3P48412 RPC37YKR025W 849 nt3.44□□□□□ -1.86
UPF3P48412 URA5YML106W 681 nt3.44□□□□□ -1.86
UPF3P48412 GCY1YOR120W 939 nt3.44□□□□□ -1.86
UPF3P48412 YOR387CYOR387C 621 nt3.44□□□□□ -1.86
UPF3P48412 GRX5YPL059W 453 nt3.44□□□□□ -1.86
UPF3P48412 CMD1YBR109C 444 nt3.44□□□□□ -1.86
UPF3P48412 RRP5YMR229C 5190 nt3.43□□□□□ -1.86
UPF3P48412 VFA1YER128W 612 nt3.43□□□□□ -1.86
UPF3P48412 SPT4YGR063C 309 nt3.43□□□□□ -1.86
UPF3P48412 YHR212CYHR212C 336 nt3.43□□□□□ -1.86
UPF3P48412 YIL141WYIL141W 390 nt3.43□□□□□ -1.86
UPF3P48412 SOD1YJR104C 465 nt3.43□□□□□ -1.86
UPF3P48412 YAR060CYAR060C 336 nt3.43□□□□□ -1.86
UPF3P48412 NDL1YLR254C 570 nt3.43□□□□□ -1.86
UPF3P48412 END3YNL084C 1050 nt3.43□□□□□ -1.86
UPF3P48412 YNL109WYNL109W 546 nt3.43□□□□□ -1.86
UPF3P48412 YPR108W-AYPR108W-A 213 nt3.43□□□□□ -1.86
UPF3P48412 snR35snR35 204 nt3.43□□□□□ -1.86
UPF3P48412 RPA135YPR010C 3612 nt3.43□□□□□ -1.86
UPF3P48412 YDR061WYDR061W 1620 nt3.42□□□□□ -1.86
UPF3P48412 EAP1YKL204W 1899 nt3.42□□□□□ -1.86
UPF3P48412 MUB1YMR100W 1863 nt3.42□□□□□ -1.86
UPF3P48412 RPS8BYER102W 603 nt3.42□□□□□ -1.86
UPF3P48412 GOS1YHL031C 672 nt3.42□□□□□ -1.86
UPF3P48412 YHR214C-EYHR214C-E 300 nt3.42□□□□□ -1.86
UPF3P48412 tV(CAC)DtV(CAC)D 73 nt3.42□□□□□ -1.86
UPF3P48412 tV(CAC)HtV(CAC)H 73 nt3.42□□□□□ -1.86
UPF3P48412 YLR050CYLR050C 486 nt3.42□□□□□ -1.86
UPF3P48412 YAR070CYAR070C 300 nt3.42□□□□□ -1.86
UPF3P48412 SHH3YMR118C 591 nt3.42□□□□□ -1.86
UPF3P48412 RPS8AYBL072C 603 nt3.42□□□□□ -1.86
UPF3P48412 TIR2YOR010C 756 nt3.42□□□□□ -1.86
UPF3P48412 URK1YNR012W 1506 nt3.42□□□□□ -1.86
UPF3P48412 MRH4YGL064C 1686 nt3.42□□□□□ -1.86
UPF3P48412 CDC37YDR168W 1521 nt3.41□□□□□ -1.86
UPF3P48412 NOP56YLR197W 1515 nt3.41□□□□□ -1.86
UPF3P48412 NSP1YJL041W 2472 nt3.41□□□□□ -1.86
UPF3P48412 YDL242WYDL242W 354 nt3.41□□□□□ -1.86
UPF3P48412 SLU7YDR088C 1149 nt3.41□□□□□ -1.86
UPF3P48412 YGL152CYGL152C 678 nt3.41□□□□□ -1.86
UPF3P48412 BTN2YGR142W 1233 nt3.41□□□□□ -1.86
UPF3P48412 DAL2YIR029W 1032 nt3.41□□□□□ -1.86
UPF3P48412 YJL156W-AYJL156W-A 222 nt3.41□□□□□ -1.86
UPF3P48412 AIM25YJR100C 984 nt3.41□□□□□ -1.86
UPF3P48412 TMA19YKL056C 504 nt3.41□□□□□ -1.86
UPF3P48412 YKT6YKL196C 603 nt3.41□□□□□ -1.86
UPF3P48412 YBL029C-AYBL029C-A 285 nt3.41□□□□□ -1.86
UPF3P48412 YMR141CYMR141C 309 nt3.41□□□□□ -1.86
UPF3P48412 MPD2YOL088C 834 nt3.41□□□□□ -1.86
UPF3P48412 RIB4YOL143C 510 nt3.41□□□□□ -1.86
UPF3P48412 YBR287WYBR287W 1284 nt3.41□□□□□ -1.86
UPF3P48412 IOC3YFR013W 2364 nt3.41□□□□□ -1.86
UPF3P48412 SSE2YBR169C 2082 nt3.4□□□□□ -1.86
UPF3P48412 YLR352WYLR352W 2424 nt3.4□□□□□ -1.86
UPF3P48412 YDR381C-AYDR381C-A 345 nt3.4□□□□□ -1.87
UPF3P48412 SUP56tL(CAA)A 82 nt3.4□□□□□ -1.87
UPF3P48412 SUP53tL(CAA)C 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)DtL(CAA)D 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)G1tL(CAA)G1 82 nt3.4□□□□□ -1.87
UPF3P48412 SUP54tL(CAA)G2 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)G3tL(CAA)G3 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)KtL(CAA)K 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)LtL(CAA)L 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)MtL(CAA)M 82 nt3.4□□□□□ -1.87
UPF3P48412 tL(CAA)NtL(CAA)N 82 nt3.4□□□□□ -1.87
UPF3P48412 MRPL9YGR220C 810 nt3.4□□□□□ -1.87
UPF3P48412 YAL016C-BYAL016C-B 186 nt3.4□□□□□ -1.87
UPF3P48412 YLR217WYLR217W 324 nt3.4□□□□□ -1.87
UPF3P48412 GIM5YML094W 492 nt3.4□□□□□ -1.87
UPF3P48412 SOK1YDR006C 2706 nt3.4□□□□□ -1.87
UPF3P48412 YDR261W-AYDR261W-A 1317 nt3.4□□□□□ -1.87
UPF3P48412 PRP22YER013W 3438 nt3.4□□□□□ -1.87
UPF3P48412 RIX1YHR197W 2292 nt3.39□□□□□ -1.87
UPF3P48412 snR83snR83 306 nt3.39□□□□□ -1.87
UPF3P48412 STE14YDR410C 720 nt3.39□□□□□ -1.87
UPF3P48412 SLD5YDR489W 885 nt3.39□□□□□ -1.87
UPF3P48412 RMD6YEL072W 696 nt3.39□□□□□ -1.87
UPF3P48412 YGR115CYGR115C 780 nt3.39□□□□□ -1.87
UPF3P48412 YGR283CYGR283C 1026 nt3.39□□□□□ -1.87
UPF3P48412 YLR076CYLR076C 423 nt3.39□□□□□ -1.87
UPF3P48412 SPP382YLR424W 2127 nt3.39□□□□□ -1.87
UPF3P48412 YNL089CYNL089C 477 nt3.39□□□□□ -1.87
UPF3P48412 RPC40YPR110C 1008 nt3.39□□□□□ -1.87
Retrieved 100 of 7,029 protein–RNA pairs in 39.1 ms