Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL033527.3-201ENST00000566366 1196 ntBASIC20.09■□□□□ 0.81
MSX2P35548 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.09■□□□□ 0.81
MSX2P35548 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.09■□□□□ 0.81
MSX2P35548 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
MSX2P35548 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 PLK5-205ENST00000642079 1969 ntBASIC20.08■□□□□ 0.81
MSX2P35548 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
MSX2P35548 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
MSX2P35548 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.08■□□□□ 0.81
MSX2P35548 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX2P35548 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.08■□□□□ 0.81
MSX2P35548 AL451085.2-201ENST00000605085 799 ntBASIC20.08■□□□□ 0.81
MSX2P35548 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSX2P35548 AC112907.3-201ENST00000577781 2400 ntBASIC20.08■□□□□ 0.8
MSX2P35548 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSX2P35548 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.08■□□□□ 0.8
MSX2P35548 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX2P35548 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX2P35548 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX2P35548 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.07■□□□□ 0.8
MSX2P35548 BX664725.1-201ENST00000438252 379 ntBASIC20.07■□□□□ 0.8
MSX2P35548 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.07■□□□□ 0.8
MSX2P35548 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
MSX2P35548 AC092028.1-203ENST00000608262 953 ntBASIC20.07■□□□□ 0.8
MSX2P35548 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
MSX2P35548 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.07■□□□□ 0.8
MSX2P35548 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX2P35548 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 AC003102.1-202ENST00000563394 1796 ntBASIC20.06■□□□□ 0.8
MSX2P35548 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSX2P35548 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSX2P35548 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.06■□□□□ 0.8
MSX2P35548 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MSX2P35548 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.06■□□□□ 0.8
MSX2P35548 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.06■□□□□ 0.8
MSX2P35548 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.06■□□□□ 0.8
MSX2P35548 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.06■□□□□ 0.8
MSX2P35548 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
MSX2P35548 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 AC006128.1-201ENST00000624704 1661 ntBASIC20.06■□□□□ 0.8
MSX2P35548 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX2P35548 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX2P35548 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.06■□□□□ 0.8
MSX2P35548 AC087289.5-201ENST00000586076 3175 ntBASIC20.05■□□□□ 0.8
MSX2P35548 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
MSX2P35548 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
MSX2P35548 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.05■□□□□ 0.8
MSX2P35548 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
MSX2P35548 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
MSX2P35548 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX2P35548 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX2P35548 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms