Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.04■□□□□ 0.8
RORAP35398 AL121832.2-201ENST00000610979 668 ntBASIC20.04■□□□□ 0.8
RORAP35398 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RORAP35398 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
RORAP35398 AL117328.2-201ENST00000624617 1940 ntBASIC20.04■□□□□ 0.8
RORAP35398 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.03■□□□□ 0.8
RORAP35398 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.03■□□□□ 0.8
RORAP35398 AL355802.2-201ENST00000402069 882 ntBASIC20.03■□□□□ 0.8
RORAP35398 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RORAP35398 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.03■□□□□ 0.8
RORAP35398 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.03■□□□□ 0.8
RORAP35398 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RORAP35398 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.03■□□□□ 0.8
RORAP35398 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
RORAP35398 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
RORAP35398 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RORAP35398 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
RORAP35398 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 AC083906.2-201ENST00000511578 360 ntBASIC20.02■□□□□ 0.8
RORAP35398 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.02■□□□□ 0.8
RORAP35398 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.02■□□□□ 0.8
RORAP35398 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.02■□□□□ 0.8
RORAP35398 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.02■□□□□ 0.8
RORAP35398 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RORAP35398 ECEL1P1-201ENST00000373592 1742 ntBASIC20.02■□□□□ 0.79
RORAP35398 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RORAP35398 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.01■□□□□ 0.79
RORAP35398 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RORAP35398 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RORAP35398 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RORAP35398 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.01■□□□□ 0.79
RORAP35398 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.01■□□□□ 0.79
RORAP35398 GUSBP6-202ENST00000438529 1198 ntBASIC20.01■□□□□ 0.79
RORAP35398 TSPY6P-201ENST00000448518 926 ntBASIC20.01■□□□□ 0.79
RORAP35398 TERF1P5-201ENST00000477545 1207 ntBASIC20.01■□□□□ 0.79
RORAP35398 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.01■□□□□ 0.79
RORAP35398 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RORAP35398 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.01■□□□□ 0.79
RORAP35398 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
RORAP35398 AC013268.1-206ENST00000638368 961 ntBASIC20.01■□□□□ 0.79
RORAP35398 AC112229.1-201ENST00000639295 961 ntBASIC20.01■□□□□ 0.79
RORAP35398 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
RORAP35398 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20■□□□□ 0.79
RORAP35398 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 APTR-203ENST00000430801 583 ntTSL 5 BASIC20■□□□□ 0.79
RORAP35398 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
RORAP35398 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20■□□□□ 0.79
RORAP35398 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20■□□□□ 0.79
RORAP35398 AC142086.2-201ENST00000569753 217 ntBASIC20■□□□□ 0.79
RORAP35398 AC008175.2-201ENST00000612840 297 ntBASIC20■□□□□ 0.79
RORAP35398 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RORAP35398 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 POU5F1P4-201ENST00000413175 1085 ntBASIC19.99■□□□□ 0.79
RORAP35398 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
RORAP35398 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.99■□□□□ 0.79
RORAP35398 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
RORAP35398 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.99■□□□□ 0.79
RORAP35398 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
RORAP35398 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RORAP35398 AC003102.1-202ENST00000563394 1796 ntBASIC19.98■□□□□ 0.79
RORAP35398 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms