Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SHMT2P34897 KRT19P1-201ENST00000405746 1186 ntBASIC20.63■□□□□ 0.89
SHMT2P34897 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.63■□□□□ 0.89
SHMT2P34897 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.63■□□□□ 0.89
SHMT2P34897 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.63■□□□□ 0.89
SHMT2P34897 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.63■□□□□ 0.89
SHMT2P34897 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHMT2P34897 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SHMT2P34897 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SHMT2P34897 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.62■□□□□ 0.89
SHMT2P34897 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.62■□□□□ 0.89
SHMT2P34897 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SHMT2P34897 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.62■□□□□ 0.89
SHMT2P34897 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SHMT2P34897 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 FAM99A-202ENST00000538190 1989 ntBASIC20.62■□□□□ 0.89
SHMT2P34897 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHMT2P34897 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.61■□□□□ 0.89
SHMT2P34897 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
SHMT2P34897 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SHMT2P34897 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.61■□□□□ 0.89
SHMT2P34897 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHMT2P34897 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.61■□□□□ 0.89
SHMT2P34897 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.6■□□□□ 0.89
SHMT2P34897 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.6■□□□□ 0.89
SHMT2P34897 KRT18P61-201ENST00000585825 1298 ntBASIC20.6■□□□□ 0.89
SHMT2P34897 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.6■□□□□ 0.89
SHMT2P34897 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SHMT2P34897 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHMT2P34897 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.59■□□□□ 0.89
SHMT2P34897 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
SHMT2P34897 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.59■□□□□ 0.89
SHMT2P34897 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.59■□□□□ 0.89
SHMT2P34897 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SHMT2P34897 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.59■□□□□ 0.89
SHMT2P34897 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SHMT2P34897 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHMT2P34897 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SHMT2P34897 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SHMT2P34897 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHMT2P34897 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHMT2P34897 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHMT2P34897 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHMT2P34897 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHMT2P34897 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.58■□□□□ 0.89
SHMT2P34897 AC022517.1-201ENST00000592429 346 ntBASIC20.58■□□□□ 0.89
SHMT2P34897 AC104187.1-201ENST00000607510 612 ntBASIC20.58■□□□□ 0.89
SHMT2P34897 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHMT2P34897 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHMT2P34897 AC026310.3-201ENST00000625186 2373 ntBASIC20.58■□□□□ 0.88
SHMT2P34897 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHMT2P34897 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SHMT2P34897 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHMT2P34897 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms