Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PGK1P00558 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
PGK1P00558 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PGK1P00558 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
PGK1P00558 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.61■■□□□ 1.37
PGK1P00558 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.61■■□□□ 1.37
PGK1P00558 UNC93B4-201ENST00000505679 747 ntBASIC23.61■■□□□ 1.37
PGK1P00558 AP003097.1-201ENST00000530657 1135 ntBASIC23.61■■□□□ 1.37
PGK1P00558 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.61■■□□□ 1.37
PGK1P00558 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.61■■□□□ 1.37
PGK1P00558 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
PGK1P00558 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PGK1P00558 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PGK1P00558 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PGK1P00558 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.6■■□□□ 1.37
PGK1P00558 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PGK1P00558 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
PGK1P00558 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.6■■□□□ 1.37
PGK1P00558 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.6■■□□□ 1.37
PGK1P00558 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.6■■□□□ 1.37
PGK1P00558 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.6■■□□□ 1.37
PGK1P00558 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.6■■□□□ 1.37
PGK1P00558 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PGK1P00558 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.6■■□□□ 1.37
PGK1P00558 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PGK1P00558 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PGK1P00558 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.59■■□□□ 1.37
PGK1P00558 AL355472.2-201ENST00000422958 438 ntBASIC23.59■■□□□ 1.37
PGK1P00558 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC23.59■■□□□ 1.37
PGK1P00558 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.59■■□□□ 1.37
PGK1P00558 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
PGK1P00558 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PGK1P00558 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PGK1P00558 KRT17P1-201ENST00000399211 1546 ntBASIC23.59■■□□□ 1.37
PGK1P00558 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PGK1P00558 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.59■■□□□ 1.37
PGK1P00558 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PGK1P00558 AC139530.1-201ENST00000575312 1977 ntBASIC23.58■■□□□ 1.37
PGK1P00558 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PGK1P00558 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PGK1P00558 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PGK1P00558 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PGK1P00558 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.58■■□□□ 1.37
PGK1P00558 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PGK1P00558 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PGK1P00558 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.58■■□□□ 1.37
PGK1P00558 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.58■■□□□ 1.37
PGK1P00558 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.58■■□□□ 1.37
PGK1P00558 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.57■■□□□ 1.36
PGK1P00558 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.57■■□□□ 1.36
PGK1P00558 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.57■■□□□ 1.36
PGK1P00558 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.57■■□□□ 1.36
PGK1P00558 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.57■■□□□ 1.36
PGK1P00558 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PGK1P00558 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
PGK1P00558 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
PGK1P00558 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.56■■□□□ 1.36
PGK1P00558 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.56■■□□□ 1.36
PGK1P00558 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
PGK1P00558 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
PGK1P00558 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.55■■□□□ 1.36
PGK1P00558 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
PGK1P00558 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.55■■□□□ 1.36
PGK1P00558 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.55■■□□□ 1.36
PGK1P00558 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.55■■□□□ 1.36
PGK1P00558 USP36-216ENST00000589424 970 ntTSL 5 BASIC23.55■■□□□ 1.36
PGK1P00558 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
PGK1P00558 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PGK1P00558 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PGK1P00558 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PGK1P00558 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PGK1P00558 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.54■■□□□ 1.36
PGK1P00558 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
PGK1P00558 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms