Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX3O95343 AC027682.1-201ENST00000562846 899 ntBASIC20.61■□□□□ 0.89
SIX3O95343 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX3O95343 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SIX3O95343 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.61■□□□□ 0.89
SIX3O95343 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX3O95343 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX3O95343 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.6■□□□□ 0.89
SIX3O95343 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX3O95343 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX3O95343 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.6■□□□□ 0.89
SIX3O95343 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
SIX3O95343 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 AC105233.4-201ENST00000642045 216 ntBASIC20.6■□□□□ 0.89
SIX3O95343 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX3O95343 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.6■□□□□ 0.89
SIX3O95343 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX3O95343 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX3O95343 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SIX3O95343 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX3O95343 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX3O95343 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.59■□□□□ 0.89
SIX3O95343 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX3O95343 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SIX3O95343 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX3O95343 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX3O95343 AC055733.4-201ENST00000638462 1354 ntBASIC20.59■□□□□ 0.89
SIX3O95343 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 EDA-201ENST00000338901 1233 ntBASIC20.58■□□□□ 0.89
SIX3O95343 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX3O95343 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.58■□□□□ 0.89
SIX3O95343 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.58■□□□□ 0.89
SIX3O95343 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SIX3O95343 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
SIX3O95343 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SIX3O95343 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.58■□□□□ 0.88
SIX3O95343 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SIX3O95343 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.58■□□□□ 0.88
SIX3O95343 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX3O95343 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX3O95343 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 AC009237.3-201ENST00000393279 1427 ntBASIC20.57■□□□□ 0.88
SIX3O95343 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX3O95343 AF213884.3-201ENST00000563833 479 ntBASIC20.57■□□□□ 0.88
SIX3O95343 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX3O95343 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.57■□□□□ 0.88
SIX3O95343 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SIX3O95343 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX3O95343 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX3O95343 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX3O95343 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX3O95343 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SIX3O95343 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX3O95343 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX3O95343 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX3O95343 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.56■□□□□ 0.88
SIX3O95343 MIR939-201ENST00000401314 82 ntBASIC20.56■□□□□ 0.88
SIX3O95343 AL355001.2-201ENST00000620617 1191 ntBASIC20.56■□□□□ 0.88
SIX3O95343 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX3O95343 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SIX3O95343 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX3O95343 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SIX3O95343 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SIX3O95343 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms