Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
SDC3O75056 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SDC3O75056 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.65■□□□□ 0.9
SDC3O75056 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 POU5F1P3-201ENST00000428824 1078 ntBASIC20.65■□□□□ 0.9
SDC3O75056 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.65■□□□□ 0.9
SDC3O75056 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.65■□□□□ 0.9
SDC3O75056 AC092118.2-201ENST00000613495 667 ntBASIC20.65■□□□□ 0.9
SDC3O75056 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDC3O75056 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SDC3O75056 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SDC3O75056 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SDC3O75056 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.64■□□□□ 0.9
SDC3O75056 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SDC3O75056 KRT16P2-201ENST00000414673 1423 ntBASIC20.64■□□□□ 0.89
SDC3O75056 RBM17P2-201ENST00000616397 1405 ntBASIC20.64■□□□□ 0.89
SDC3O75056 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC3O75056 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC3O75056 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
SDC3O75056 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SDC3O75056 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.64■□□□□ 0.89
SDC3O75056 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.64■□□□□ 0.89
SDC3O75056 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC3O75056 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.64■□□□□ 0.89
SDC3O75056 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC3O75056 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.64■□□□□ 0.89
SDC3O75056 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.64■□□□□ 0.89
SDC3O75056 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.64■□□□□ 0.89
SDC3O75056 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.63■□□□□ 0.89
SDC3O75056 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.63■□□□□ 0.89
SDC3O75056 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.63■□□□□ 0.89
SDC3O75056 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 AL512625.2-201ENST00000417533 625 ntBASIC20.63■□□□□ 0.89
SDC3O75056 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 AC008687.6-201ENST00000596318 630 ntBASIC20.63■□□□□ 0.89
SDC3O75056 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SDC3O75056 AC003102.1-202ENST00000563394 1796 ntBASIC20.63■□□□□ 0.89
SDC3O75056 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SDC3O75056 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC3O75056 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SDC3O75056 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC3O75056 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SDC3O75056 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC3O75056 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.62■□□□□ 0.89
SDC3O75056 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.62■□□□□ 0.89
SDC3O75056 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SDC3O75056 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC3O75056 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC3O75056 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC3O75056 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SDC3O75056 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.61■□□□□ 0.89
SDC3O75056 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDC3O75056 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.61■□□□□ 0.89
SDC3O75056 KRT18P29-201ENST00000397031 1267 ntBASIC20.61■□□□□ 0.89
SDC3O75056 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.61■□□□□ 0.89
SDC3O75056 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.61■□□□□ 0.89
SDC3O75056 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.61■□□□□ 0.89
SDC3O75056 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC3O75056 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.61■□□□□ 0.89
SDC3O75056 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC3O75056 AL591742.1-201ENST00000604433 565 ntBASIC20.61■□□□□ 0.89
SDC3O75056 AC083880.1-201ENST00000608266 535 ntBASIC20.61■□□□□ 0.89
SDC3O75056 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDC3O75056 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SDC3O75056 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDC3O75056 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.6■□□□□ 0.89
SDC3O75056 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 RARRES2P4-201ENST00000514074 484 ntBASIC20.6■□□□□ 0.89
SDC3O75056 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDC3O75056 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
SDC3O75056 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms