Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.23■□□□□ 0.83
CACNA1AO00555 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 AL358472.4-201ENST00000633140 710 ntBASIC20.23■□□□□ 0.83
CACNA1AO00555 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.23■□□□□ 0.83
CACNA1AO00555 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1AO00555 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CACNA1AO00555 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.22■□□□□ 0.83
CACNA1AO00555 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CACNA1AO00555 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.22■□□□□ 0.83
CACNA1AO00555 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 MMP23A-201ENST00000234610 1017 ntBASIC20.22■□□□□ 0.83
CACNA1AO00555 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.22■□□□□ 0.83
CACNA1AO00555 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.22■□□□□ 0.83
CACNA1AO00555 WWOX-216ENST00000569818 525 ntBASIC20.22■□□□□ 0.83
CACNA1AO00555 KRT18P22-201ENST00000402024 1347 ntBASIC20.22■□□□□ 0.83
CACNA1AO00555 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1AO00555 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
CACNA1AO00555 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1AO00555 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CACNA1AO00555 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1AO00555 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.21■□□□□ 0.83
CACNA1AO00555 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.21■□□□□ 0.83
CACNA1AO00555 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CACNA1AO00555 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CACNA1AO00555 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.21■□□□□ 0.83
CACNA1AO00555 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1AO00555 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1AO00555 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1AO00555 AL450487.1-201ENST00000426799 995 ntBASIC20.21■□□□□ 0.83
CACNA1AO00555 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
CACNA1AO00555 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.2■□□□□ 0.83
CACNA1AO00555 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CACNA1AO00555 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CACNA1AO00555 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.2■□□□□ 0.82
CACNA1AO00555 AL589743.5-201ENST00000616611 1050 ntBASIC20.2■□□□□ 0.82
CACNA1AO00555 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CACNA1AO00555 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CACNA1AO00555 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.2■□□□□ 0.82
CACNA1AO00555 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.2■□□□□ 0.82
CACNA1AO00555 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.2■□□□□ 0.82
CACNA1AO00555 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CACNA1AO00555 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.19■□□□□ 0.82
CACNA1AO00555 AC009947.2-201ENST00000444014 672 ntBASIC20.19■□□□□ 0.82
CACNA1AO00555 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 AC100791.3-201ENST00000617619 330 ntBASIC20.19■□□□□ 0.82
CACNA1AO00555 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.19■□□□□ 0.82
CACNA1AO00555 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.19■□□□□ 0.82
CACNA1AO00555 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CACNA1AO00555 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.19■□□□□ 0.82
CACNA1AO00555 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
CACNA1AO00555 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.19■□□□□ 0.82
CACNA1AO00555 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.19■□□□□ 0.82
CACNA1AO00555 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CACNA1AO00555 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.18■□□□□ 0.82
CACNA1AO00555 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
CACNA1AO00555 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.18■□□□□ 0.82
CACNA1AO00555 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CACNA1AO00555 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
CACNA1AO00555 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.18■□□□□ 0.82
CACNA1AO00555 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CACNA1AO00555 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1AO00555 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.17■□□□□ 0.82
CACNA1AO00555 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1AO00555 AL023875.1-201ENST00000640777 796 ntBASIC20.17■□□□□ 0.82
CACNA1AO00555 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.17■□□□□ 0.82
CACNA1AO00555 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms