Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.28■□□□□ 0.84
SLC28A1O00337 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.28■□□□□ 0.84
SLC28A1O00337 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
SLC28A1O00337 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.28■□□□□ 0.84
SLC28A1O00337 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.28■□□□□ 0.84
SLC28A1O00337 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SLC28A1O00337 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SLC28A1O00337 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.28■□□□□ 0.84
SLC28A1O00337 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SLC28A1O00337 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC28A1O00337 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SLC28A1O00337 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.27■□□□□ 0.84
SLC28A1O00337 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.27■□□□□ 0.84
SLC28A1O00337 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SLC28A1O00337 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC28A1O00337 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SLC28A1O00337 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SLC28A1O00337 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.27■□□□□ 0.83
SLC28A1O00337 AC008406.3-201ENST00000620001 1374 ntBASIC20.26■□□□□ 0.83
SLC28A1O00337 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 AC099791.1-201ENST00000416440 715 ntBASIC20.26■□□□□ 0.83
SLC28A1O00337 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC28A1O00337 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.26■□□□□ 0.83
SLC28A1O00337 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC28A1O00337 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.26■□□□□ 0.83
SLC28A1O00337 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC28A1O00337 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC28A1O00337 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.26■□□□□ 0.83
SLC28A1O00337 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC28A1O00337 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC28A1O00337 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC28A1O00337 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC28A1O00337 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SLC28A1O00337 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC28A1O00337 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.25■□□□□ 0.83
SLC28A1O00337 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SLC28A1O00337 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC28A1O00337 AC105233.4-201ENST00000642045 216 ntBASIC20.25■□□□□ 0.83
SLC28A1O00337 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC28A1O00337 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC28A1O00337 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC28A1O00337 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC28A1O00337 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 AC055733.4-201ENST00000638462 1354 ntBASIC20.24■□□□□ 0.83
SLC28A1O00337 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC28A1O00337 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC28A1O00337 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.24■□□□□ 0.83
SLC28A1O00337 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SLC28A1O00337 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.24■□□□□ 0.83
SLC28A1O00337 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.24■□□□□ 0.83
SLC28A1O00337 PBX2P1-201ENST00000493219 1291 ntBASIC20.24■□□□□ 0.83
SLC28A1O00337 AC027682.1-201ENST00000562846 899 ntBASIC20.24■□□□□ 0.83
SLC28A1O00337 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC28A1O00337 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.24■□□□□ 0.83
SLC28A1O00337 TSPY26P-201ENST00000476365 1326 ntBASIC20.24■□□□□ 0.83
SLC28A1O00337 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SLC28A1O00337 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
SLC28A1O00337 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC28A1O00337 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC28A1O00337 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms