Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 AC124016.1-201ENST00000609552 612 ntBASIC16.62■□□□□ 0.25
COL6A5A8TX70 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 AL589743.5-201ENST00000616611 1050 ntBASIC16.61■□□□□ 0.25
COL6A5A8TX70 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A5A8TX70 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A5A8TX70 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 DUSP5P1-201ENST00000441325 1139 ntBASIC16.6■□□□□ 0.25
COL6A5A8TX70 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A5A8TX70 KRT18P22-201ENST00000402024 1347 ntBASIC16.6■□□□□ 0.25
COL6A5A8TX70 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A5A8TX70 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 LINC00543-201ENST00000567234 1845 ntBASIC16.59■□□□□ 0.25
COL6A5A8TX70 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AC026396.1-201ENST00000419388 421 ntBASIC16.59■□□□□ 0.25
COL6A5A8TX70 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AL353803.4-201ENST00000565882 1934 ntBASIC16.59■□□□□ 0.25
COL6A5A8TX70 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 DUSP8P3-201ENST00000399571 1760 ntBASIC16.59■□□□□ 0.25
COL6A5A8TX70 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A5A8TX70 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A5A8TX70 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.58■□□□□ 0.25
COL6A5A8TX70 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A5A8TX70 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A5A8TX70 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A5A8TX70 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL6A5A8TX70 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A5A8TX70 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms