Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 EEF1DP3-203ENST00000566025 782 ntBASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 GUSBP5-202ENST00000510805 1989 ntBASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.14■□□□□ 0.97
TM9SF3Q9HD45 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 SLC7A5P1-201ENST00000568957 537 ntBASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 AC013268.1-206ENST00000638368 961 ntBASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 AC112229.1-201ENST00000639295 961 ntBASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 AC133041.1-202ENST00000642053 222 ntBASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TM9SF3Q9HD45 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 TERF1P5-201ENST00000477545 1207 ntBASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 AC053503.5-201ENST00000601508 636 ntBASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 AP006587.3-201ENST00000525742 1516 ntBASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TM9SF3Q9HD45 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 AC098934.4-201ENST00000564127 592 ntBASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
TM9SF3Q9HD45 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 AC127496.7-201ENST00000625110 1798 ntBASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 AC073210.2-201ENST00000430369 194 ntBASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 MIR4651-201ENST00000582622 73 ntBASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.1■□□□□ 0.97
TM9SF3Q9HD45 ECEL1P1-201ENST00000373592 1742 ntBASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TM9SF3Q9HD45 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms