Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 TSPY9P-201ENST00000440215 945 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 TSPY11P-201ENST00000442607 1045 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 MIR6724-1-201ENST00000616420 92 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 MIR6724-2-201ENST00000616483 92 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 MIR6724-4-201ENST00000617390 92 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 MIR6724-3-201ENST00000622482 92 ntBASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28BQ9BUN5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 AC003102.1-202ENST00000563394 1796 ntBASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CCDC28BQ9BUN5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CCDC28BQ9BUN5 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC28BQ9BUN5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 GABARAPL3-202ENST00000624044 1851 ntBASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28BQ9BUN5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 AC239859.2-201ENST00000444165 318 ntBASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28BQ9BUN5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28BQ9BUN5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms