Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDDC3Q8N4P3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.25■□□□□ 0.99
HDDC3Q8N4P3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 AC127496.7-201ENST00000625110 1798 ntBASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 POU5F1P4-201ENST00000413175 1085 ntBASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 AC105036.2-201ENST00000569468 176 ntBASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 AC013268.1-206ENST00000638368 961 ntBASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 AC112229.1-201ENST00000639295 961 ntBASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDDC3Q8N4P3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 AC003102.1-202ENST00000563394 1796 ntBASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 AC073210.2-201ENST00000430369 194 ntBASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.23■□□□□ 0.99
HDDC3Q8N4P3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDDC3Q8N4P3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 KRT18P29-201ENST00000397031 1267 ntBASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HDDC3Q8N4P3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 POU5F1P3-201ENST00000428824 1078 ntBASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 AC133552.2-202ENST00000575694 574 ntBASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 AC008687.6-201ENST00000596318 630 ntBASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.2■□□□□ 0.98
HDDC3Q8N4P3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDDC3Q8N4P3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms