Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 AC025884.2-201ENST00000553429 711 ntBASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 MIR3960-201ENST00000583311 91 ntBASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28AQ8IWP9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 SMPD5-203ENST00000639008 1464 ntBASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28AQ8IWP9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 ECEL1P2-201ENST00000461596 1295 ntBASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28AQ8IWP9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28AQ8IWP9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 Z98882.1-201ENST00000622160 2253 ntBASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28AQ8IWP9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28AQ8IWP9 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms