Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 AC004854.2-201ENST00000608450 1441 ntBASIC20.73■□□□□ 0.91
VRK3Q8IV63 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VRK3Q8IV63 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
VRK3Q8IV63 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 AC026310.3-201ENST00000625186 2373 ntBASIC20.72■□□□□ 0.91
VRK3Q8IV63 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.72■□□□□ 0.91
VRK3Q8IV63 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.72■□□□□ 0.91
VRK3Q8IV63 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VRK3Q8IV63 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.72■□□□□ 0.91
VRK3Q8IV63 AP004607.4-201ENST00000530158 1459 ntBASIC20.72■□□□□ 0.91
VRK3Q8IV63 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VRK3Q8IV63 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK3Q8IV63 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 AC034268.1-201ENST00000441047 882 ntBASIC20.71■□□□□ 0.91
VRK3Q8IV63 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.71■□□□□ 0.91
VRK3Q8IV63 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VRK3Q8IV63 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
VRK3Q8IV63 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
VRK3Q8IV63 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 AC053503.5-201ENST00000601508 636 ntBASIC20.7■□□□□ 0.9
VRK3Q8IV63 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.7■□□□□ 0.9
VRK3Q8IV63 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK3Q8IV63 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 AC104187.1-201ENST00000607510 612 ntBASIC20.69■□□□□ 0.9
VRK3Q8IV63 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VRK3Q8IV63 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
VRK3Q8IV63 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK3Q8IV63 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.68■□□□□ 0.9
VRK3Q8IV63 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 253.4 ms