Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 AP006587.3-201ENST00000525742 1516 ntBASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 AC136469.2-201ENST00000623944 1028 ntBASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 SYT6-210ENST00000641643 1587 ntBASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RUNDC3AQ59EK9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 SLC47A1P1-202ENST00000449666 945 ntBASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.93■□□□□ 0.78
RUNDC3AQ59EK9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 DUX4L19-201ENST00000557448 1267 ntBASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RUNDC3AQ59EK9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 AC011298.3-201ENST00000615796 283 ntBASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
RUNDC3AQ59EK9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.9■□□□□ 0.78
RUNDC3AQ59EK9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RUNDC3AQ59EK9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms