Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPS28P62857 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPS28P62857 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPS28P62857 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPS28P62857 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
RPS28P62857 GABARAPL3-202ENST00000624044 1851 ntBASIC12.4□□□□□ -0.42
RPS28P62857 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
RPS28P62857 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
RPS28P62857 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.4□□□□□ -0.42
RPS28P62857 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
RPS28P62857 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPS28P62857 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC12.4□□□□□ -0.43
RPS28P62857 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
RPS28P62857 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
RPS28P62857 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.43
RPS28P62857 AP005212.1-201ENST00000581547 1997 ntBASIC12.39□□□□□ -0.43
RPS28P62857 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.39□□□□□ -0.43
RPS28P62857 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
RPS28P62857 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC12.39□□□□□ -0.43
RPS28P62857 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC12.39□□□□□ -0.43
RPS28P62857 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
RPS28P62857 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
RPS28P62857 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RPS28P62857 AC010864.1-201ENST00000609407 1511 ntBASIC12.39□□□□□ -0.43
RPS28P62857 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC12.39□□□□□ -0.43
RPS28P62857 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
RPS28P62857 TPR-209ENST00000613151 2478 ntTSL 5 BASIC12.39□□□□□ -0.43
RPS28P62857 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC12.39□□□□□ -0.43
RPS28P62857 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPS28P62857 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC12.38□□□□□ -0.43
RPS28P62857 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC12.38□□□□□ -0.43
RPS28P62857 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC12.38□□□□□ -0.43
RPS28P62857 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
RPS28P62857 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC12.38□□□□□ -0.43
RPS28P62857 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC12.38□□□□□ -0.43
RPS28P62857 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC12.38□□□□□ -0.43
RPS28P62857 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC12.38□□□□□ -0.43
RPS28P62857 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
RPS28P62857 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
RPS28P62857 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RPS28P62857 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
RPS28P62857 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RPS28P62857 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
RPS28P62857 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RPS28P62857 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC12.37□□□□□ -0.43
RPS28P62857 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RPS28P62857 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC12.37□□□□□ -0.43
RPS28P62857 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
RPS28P62857 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms