Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.74■□□□□ 0.75
CLK1P49759 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
CLK1P49759 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CLK1P49759 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLK1P49759 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLK1P49759 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.74■□□□□ 0.75
CLK1P49759 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.73■□□□□ 0.75
CLK1P49759 CA15P2-201ENST00000611168 834 ntBASIC19.73■□□□□ 0.75
CLK1P49759 AC110285.6-201ENST00000617652 491 ntBASIC19.73■□□□□ 0.75
CLK1P49759 AC087239.1-201ENST00000622671 572 ntBASIC19.73■□□□□ 0.75
CLK1P49759 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLK1P49759 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLK1P49759 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLK1P49759 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.72■□□□□ 0.75
CLK1P49759 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CLK1P49759 RNF165-205ENST00000588679 2904 ntBASIC19.72■□□□□ 0.75
CLK1P49759 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.72■□□□□ 0.75
CLK1P49759 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLK1P49759 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 AC087742.1-201ENST00000575880 1738 ntBASIC19.71■□□□□ 0.75
CLK1P49759 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.71■□□□□ 0.75
CLK1P49759 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.71■□□□□ 0.75
CLK1P49759 AC233992.3-201ENST00000607491 485 ntBASIC19.71■□□□□ 0.75
CLK1P49759 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
CLK1P49759 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLK1P49759 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLK1P49759 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CLK1P49759 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.71■□□□□ 0.75
CLK1P49759 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.7■□□□□ 0.74
CLK1P49759 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.7■□□□□ 0.74
CLK1P49759 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
CLK1P49759 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.7■□□□□ 0.74
CLK1P49759 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.7■□□□□ 0.74
CLK1P49759 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.7■□□□□ 0.74
CLK1P49759 AL355001.2-201ENST00000620617 1191 ntBASIC19.7■□□□□ 0.74
CLK1P49759 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.7■□□□□ 0.74
CLK1P49759 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CLK1P49759 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLK1P49759 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.69■□□□□ 0.74
CLK1P49759 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CLK1P49759 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CLK1P49759 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.69■□□□□ 0.74
CLK1P49759 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLK1P49759 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLK1P49759 SLC47A1P1-202ENST00000449666 945 ntBASIC19.69■□□□□ 0.74
CLK1P49759 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
CLK1P49759 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.69■□□□□ 0.74
CLK1P49759 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.69■□□□□ 0.74
CLK1P49759 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.69■□□□□ 0.74
CLK1P49759 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLK1P49759 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLK1P49759 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CLK1P49759 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLK1P49759 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CLK1P49759 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLK1P49759 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLK1P49759 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.68■□□□□ 0.74
CLK1P49759 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLK1P49759 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms