Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CXCL12P48061 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CXCL12P48061 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CXCL12P48061 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.25■□□□□ 0.99
CXCL12P48061 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CXCL12P48061 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.25■□□□□ 0.99
CXCL12P48061 AL359736.2-201ENST00000621992 437 ntBASIC21.25■□□□□ 0.99
CXCL12P48061 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.25■□□□□ 0.99
CXCL12P48061 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.25■□□□□ 0.99
CXCL12P48061 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CXCL12P48061 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.24■□□□□ 0.99
CXCL12P48061 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.24■□□□□ 0.99
CXCL12P48061 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.24■□□□□ 0.99
CXCL12P48061 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CXCL12P48061 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.24■□□□□ 0.99
CXCL12P48061 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CXCL12P48061 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CXCL12P48061 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.24■□□□□ 0.99
CXCL12P48061 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CXCL12P48061 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CXCL12P48061 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.23■□□□□ 0.99
CXCL12P48061 MIR718-201ENST00000390190 70 ntBASIC21.23■□□□□ 0.99
CXCL12P48061 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.23■□□□□ 0.99
CXCL12P48061 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.23■□□□□ 0.99
CXCL12P48061 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.23■□□□□ 0.99
CXCL12P48061 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.23■□□□□ 0.99
CXCL12P48061 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CXCL12P48061 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CXCL12P48061 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.23■□□□□ 0.99
CXCL12P48061 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CXCL12P48061 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CXCL12P48061 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CXCL12P48061 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.22■□□□□ 0.99
CXCL12P48061 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.22■□□□□ 0.99
CXCL12P48061 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CXCL12P48061 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.22■□□□□ 0.99
CXCL12P48061 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.22■□□□□ 0.99
CXCL12P48061 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CXCL12P48061 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.21■□□□□ 0.99
CXCL12P48061 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CXCL12P48061 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
CXCL12P48061 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CXCL12P48061 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.21■□□□□ 0.99
CXCL12P48061 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.21■□□□□ 0.99
CXCL12P48061 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CXCL12P48061 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.21■□□□□ 0.99
CXCL12P48061 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.21■□□□□ 0.99
CXCL12P48061 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.21■□□□□ 0.99
CXCL12P48061 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CXCL12P48061 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.2■□□□□ 0.99
CXCL12P48061 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CXCL12P48061 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.2■□□□□ 0.98
CXCL12P48061 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CXCL12P48061 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.2■□□□□ 0.98
CXCL12P48061 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.2■□□□□ 0.98
CXCL12P48061 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.2■□□□□ 0.98
CXCL12P48061 AC060766.5-201ENST00000590539 871 ntBASIC21.2■□□□□ 0.98
CXCL12P48061 AC008403.3-201ENST00000598924 454 ntBASIC21.2■□□□□ 0.98
CXCL12P48061 FAM197Y4-202ENST00000622692 608 ntBASIC21.2■□□□□ 0.98
CXCL12P48061 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CXCL12P48061 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CXCL12P48061 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CXCL12P48061 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.19■□□□□ 0.98
CXCL12P48061 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.19■□□□□ 0.98
CXCL12P48061 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.19■□□□□ 0.98
CXCL12P48061 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.19■□□□□ 0.98
CXCL12P48061 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CXCL12P48061 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 KRT17P1-201ENST00000399211 1546 ntBASIC21.19■□□□□ 0.98
CXCL12P48061 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CXCL12P48061 AC061975.6-201ENST00000579045 1553 ntBASIC21.19■□□□□ 0.98
CXCL12P48061 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CXCL12P48061 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CXCL12P48061 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms