Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.85■□□□□ 0.77
SOX3P41225 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SOX3P41225 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SOX3P41225 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX3P41225 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SOX3P41225 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX3P41225 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SOX3P41225 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX3P41225 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX3P41225 NTF6G-201ENST00000591094 616 ntBASIC19.84■□□□□ 0.77
SOX3P41225 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SOX3P41225 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.84■□□□□ 0.77
SOX3P41225 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX3P41225 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SOX3P41225 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.84■□□□□ 0.77
SOX3P41225 AC009237.3-201ENST00000393279 1427 ntBASIC19.84■□□□□ 0.77
SOX3P41225 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.84■□□□□ 0.77
SOX3P41225 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SOX3P41225 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SOX3P41225 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SOX3P41225 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.83■□□□□ 0.77
SOX3P41225 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.83■□□□□ 0.77
SOX3P41225 AP004607.7-201ENST00000527152 1677 ntBASIC19.83■□□□□ 0.76
SOX3P41225 AC005224.4-201ENST00000583262 1652 ntBASIC19.83■□□□□ 0.76
SOX3P41225 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SOX3P41225 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX3P41225 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX3P41225 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.83■□□□□ 0.76
SOX3P41225 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SOX3P41225 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX3P41225 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.82■□□□□ 0.76
SOX3P41225 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.82■□□□□ 0.76
SOX3P41225 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SOX3P41225 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SOX3P41225 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SOX3P41225 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.82■□□□□ 0.76
SOX3P41225 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.82■□□□□ 0.76
SOX3P41225 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SOX3P41225 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SOX3P41225 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX3P41225 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.81■□□□□ 0.76
SOX3P41225 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.81■□□□□ 0.76
SOX3P41225 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.81■□□□□ 0.76
SOX3P41225 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SOX3P41225 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX3P41225 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX3P41225 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX3P41225 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX3P41225 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SOX3P41225 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.8■□□□□ 0.76
SOX3P41225 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.8■□□□□ 0.76
SOX3P41225 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SOX3P41225 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX3P41225 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SOX3P41225 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX3P41225 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.79■□□□□ 0.76
SOX3P41225 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.79■□□□□ 0.76
SOX3P41225 AC079140.4-201ENST00000507448 529 ntBASIC19.79■□□□□ 0.76
SOX3P41225 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.79■□□□□ 0.76
SOX3P41225 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.79■□□□□ 0.76
SOX3P41225 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX3P41225 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SOX3P41225 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX3P41225 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX3P41225 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SOX3P41225 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.78■□□□□ 0.76
SOX3P41225 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 FAM99A-202ENST00000538190 1989 ntBASIC19.78■□□□□ 0.76
SOX3P41225 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms