Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
TPM1P09493 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
TPM1P09493 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
TPM1P09493 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.2■■□□□ 1.3
TPM1P09493 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC23.2■■□□□ 1.3
TPM1P09493 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.2■■□□□ 1.3
TPM1P09493 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
TPM1P09493 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 AC010141.3-201ENST00000456659 717 ntBASIC23.2■■□□□ 1.3
TPM1P09493 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
TPM1P09493 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.2■■□□□ 1.3
TPM1P09493 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TPM1P09493 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.19■■□□□ 1.3
TPM1P09493 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
TPM1P09493 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.19■■□□□ 1.3
TPM1P09493 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.19■■□□□ 1.3
TPM1P09493 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TPM1P09493 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
TPM1P09493 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
TPM1P09493 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.18■■□□□ 1.3
TPM1P09493 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.18■■□□□ 1.3
TPM1P09493 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.18■■□□□ 1.3
TPM1P09493 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.18■■□□□ 1.3
TPM1P09493 AL157384.1-201ENST00000445995 2473 ntBASIC23.18■■□□□ 1.3
TPM1P09493 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
TPM1P09493 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.18■■□□□ 1.3
TPM1P09493 OR2I1P-207ENST00000453522 948 ntBASIC23.18■■□□□ 1.3
TPM1P09493 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.18■■□□□ 1.3
TPM1P09493 AC099791.2-201ENST00000605725 427 ntBASIC23.18■■□□□ 1.3
TPM1P09493 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TPM1P09493 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TPM1P09493 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
TPM1P09493 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TPM1P09493 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.17■■□□□ 1.3
TPM1P09493 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TPM1P09493 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TPM1P09493 AC009299.2-201ENST00000482477 511 ntBASIC23.17■■□□□ 1.3
TPM1P09493 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.17■■□□□ 1.3
TPM1P09493 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.17■■□□□ 1.3
TPM1P09493 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.17■■□□□ 1.3
TPM1P09493 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
TPM1P09493 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.17■■□□□ 1.3
TPM1P09493 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
TPM1P09493 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.16■■□□□ 1.3
TPM1P09493 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
TPM1P09493 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.16■■□□□ 1.3
TPM1P09493 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
TPM1P09493 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.16■■□□□ 1.3
TPM1P09493 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
TPM1P09493 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TPM1P09493 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
TPM1P09493 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.15■■□□□ 1.3
TPM1P09493 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
TPM1P09493 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.15■■□□□ 1.3
TPM1P09493 UNC93B8-201ENST00000511903 705 ntBASIC23.15■■□□□ 1.3
TPM1P09493 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.15■■□□□ 1.3
TPM1P09493 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
TPM1P09493 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TPM1P09493 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
TPM1P09493 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.14■■□□□ 1.3
TPM1P09493 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
TPM1P09493 AL049796.1-201ENST00000565336 1766 ntBASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms