Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXD4P09016 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXD4P09016 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HOXD4P09016 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.12■□□□□ 0.65
HOXD4P09016 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.12■□□□□ 0.65
HOXD4P09016 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD4P09016 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
HOXD4P09016 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD4P09016 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD4P09016 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 AL355802.2-201ENST00000402069 882 ntBASIC19.11■□□□□ 0.65
HOXD4P09016 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 MFSD11-216ENST00000590393 1141 ntBASIC19.11■□□□□ 0.65
HOXD4P09016 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD4P09016 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HOXD4P09016 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD4P09016 AC073130.3-201ENST00000624389 2278 ntBASIC19.11■□□□□ 0.65
HOXD4P09016 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
HOXD4P09016 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD4P09016 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD4P09016 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD4P09016 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD4P09016 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD4P09016 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 ABHD17AP1-201ENST00000358206 933 ntBASIC19.09■□□□□ 0.65
HOXD4P09016 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 AC007322.1-201ENST00000426983 750 ntBASIC19.09■□□□□ 0.65
HOXD4P09016 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 AC010141.2-201ENST00000452426 721 ntBASIC19.09■□□□□ 0.65
HOXD4P09016 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 SLC7A5P1-201ENST00000568957 537 ntBASIC19.09■□□□□ 0.65
HOXD4P09016 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXD4P09016 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 MYCNOS-205ENST00000641950 531 ntBASIC19.09■□□□□ 0.65
HOXD4P09016 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXD4P09016 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXD4P09016 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HOXD4P09016 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.08■□□□□ 0.65
HOXD4P09016 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HOXD4P09016 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HOXD4P09016 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
HOXD4P09016 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HOXD4P09016 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
HOXD4P09016 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXD4P09016 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXD4P09016 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.08■□□□□ 0.64
HOXD4P09016 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.08■□□□□ 0.64
HOXD4P09016 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.08■□□□□ 0.64
HOXD4P09016 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.08■□□□□ 0.64
HOXD4P09016 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.08■□□□□ 0.64
HOXD4P09016 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.08■□□□□ 0.64
HOXD4P09016 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXD4P09016 AC127496.7-201ENST00000625110 1798 ntBASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms