Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC9.58□□□□□ -0.88
USH2AO75445 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC9.58□□□□□ -0.88
USH2AO75445 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 ISCU-203ENST00000431221 799 ntTSL 2 BASIC9.58□□□□□ -0.88
USH2AO75445 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC9.58□□□□□ -0.88
USH2AO75445 MTDHP1-201ENST00000605323 784 ntBASIC9.58□□□□□ -0.88
USH2AO75445 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 DUSP5P1-201ENST00000441325 1139 ntBASIC9.58□□□□□ -0.88
USH2AO75445 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC9.57□□□□□ -0.88
USH2AO75445 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC9.57□□□□□ -0.88
USH2AO75445 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
USH2AO75445 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
USH2AO75445 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC9.57□□□□□ -0.88
USH2AO75445 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 AC113410.3-201ENST00000623366 203 ntBASIC9.57□□□□□ -0.88
USH2AO75445 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 KRT17P2-201ENST00000300992 1314 ntBASIC9.57□□□□□ -0.88
USH2AO75445 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 THEM4-205ENST00000489410 643 ntTSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
USH2AO75445 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC9.57□□□□□ -0.88
USH2AO75445 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
USH2AO75445 AC005521.1-201ENST00000393351 872 ntBASIC9.57□□□□□ -0.88
USH2AO75445 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC9.57□□□□□ -0.88
USH2AO75445 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC9.57□□□□□ -0.88
USH2AO75445 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 ISG20-202ENST00000379224 540 ntTSL 3 BASIC9.56□□□□□ -0.88
USH2AO75445 HES2-205ENST00000487437 968 ntTSL 3 BASIC9.56□□□□□ -0.88
USH2AO75445 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
USH2AO75445 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 CFL2-205ENST00000555765 632 ntTSL 2 BASIC9.56□□□□□ -0.88
USH2AO75445 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC9.56□□□□□ -0.88
USH2AO75445 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 PENK-204ENST00000518770 863 ntTSL 2 BASIC9.56□□□□□ -0.88
USH2AO75445 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC9.56□□□□□ -0.88
USH2AO75445 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 AL135905.2-201ENST00000584934 1404 ntBASIC9.56□□□□□ -0.88
USH2AO75445 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC9.56□□□□□ -0.88
USH2AO75445 OR2A1-AS1-207ENST00000486094 819 ntBASIC9.56□□□□□ -0.88
USH2AO75445 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
USH2AO75445 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC9.56□□□□□ -0.88
USH2AO75445 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC9.55□□□□□ -0.88
USH2AO75445 AL023875.1-201ENST00000640777 796 ntBASIC9.55□□□□□ -0.88
USH2AO75445 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC9.55□□□□□ -0.88
USH2AO75445 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC9.55□□□□□ -0.88
USH2AO75445 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC9.55□□□□□ -0.88
USH2AO75445 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC9.55□□□□□ -0.88
USH2AO75445 GRAP-204ENST00000573099 846 ntTSL 3 BASIC9.55□□□□□ -0.88
USH2AO75445 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC9.55□□□□□ -0.88
USH2AO75445 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 DUT-205ENST00000558813 769 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC9.55□□□□□ -0.88
USH2AO75445 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 DUSP8P3-201ENST00000399571 1760 ntBASIC9.55□□□□□ -0.88
USH2AO75445 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
USH2AO75445 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms