Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 DUSP8P3-201ENST00000399571 1760 ntBASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 KRT16P2-201ENST00000414673 1423 ntBASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 ARMC10P1-201ENST00000313754 855 ntBASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 AL591742.1-201ENST00000604433 565 ntBASIC19.25■□□□□ 0.67
COL6A6A6NMZ7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL6A6A6NMZ7 AC145676.1-201ENST00000514988 2004 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 POM121L13P-201ENST00000422362 380 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 KRT17P1-201ENST00000399211 1546 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 POU5F1P4-201ENST00000413175 1085 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 CD177P1-201ENST00000606252 935 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 AL135905.2-201ENST00000584934 1404 ntBASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A6A6NMZ7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 RPS2P55-201ENST00000397318 883 ntBASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 TSPY7P-201ENST00000431358 1114 ntBASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 AC107956.1-201ENST00000494359 873 ntBASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 LSM12P1-201ENST00000411836 588 ntBASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A6A6NMZ7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 AP004607.7-201ENST00000527152 1677 ntBASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 RN7SL471P-201ENST00000580476 299 ntBASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 AP001412.1-201ENST00000608405 714 ntBASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 AC120498.10-201ENST00000621827 505 ntBASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 HLA-B-256ENST00000639848 1089 ntBASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A6A6NMZ7 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.66
COL6A6A6NMZ7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 AL355472.2-201ENST00000422958 438 ntBASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms