Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 AC093787.1-201ENST00000450396 207 ntBASIC25.21■■□□□ 1.63
DDX4Q9NQI0 AC008175.2-201ENST00000612840 297 ntBASIC25.21■■□□□ 1.63
DDX4Q9NQI0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
DDX4Q9NQI0 AC061975.6-201ENST00000579045 1553 ntBASIC25.21■■□□□ 1.63
DDX4Q9NQI0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.2■■□□□ 1.63
DDX4Q9NQI0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
DDX4Q9NQI0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
DDX4Q9NQI0 TSPY20P-201ENST00000450910 630 ntBASIC25.2■■□□□ 1.62
DDX4Q9NQI0 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.2■■□□□ 1.62
DDX4Q9NQI0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
DDX4Q9NQI0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC25.2■■□□□ 1.62
DDX4Q9NQI0 AC092053.2-201ENST00000640557 1818 ntBASIC25.19■■□□□ 1.62
DDX4Q9NQI0 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
DDX4Q9NQI0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 POU5F1P4-201ENST00000413175 1085 ntBASIC25.18■■□□□ 1.62
DDX4Q9NQI0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 MIR4651-201ENST00000582622 73 ntBASIC25.18■■□□□ 1.62
DDX4Q9NQI0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
DDX4Q9NQI0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 AC073210.2-201ENST00000430369 194 ntBASIC25.17■■□□□ 1.62
DDX4Q9NQI0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 AC016405.3-201ENST00000607710 860 ntBASIC25.17■■□□□ 1.62
DDX4Q9NQI0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
DDX4Q9NQI0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 RBM17P2-201ENST00000616397 1405 ntBASIC25.16■■□□□ 1.62
DDX4Q9NQI0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 AC133041.1-202ENST00000642053 222 ntBASIC25.16■■□□□ 1.62
DDX4Q9NQI0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.16■■□□□ 1.62
DDX4Q9NQI0 AC127496.7-201ENST00000625110 1798 ntBASIC25.16■■□□□ 1.62
DDX4Q9NQI0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC25.15■■□□□ 1.62
DDX4Q9NQI0 MIPEPP3-201ENST00000412105 444 ntBASIC25.15■■□□□ 1.62
DDX4Q9NQI0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms