Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 AC133637.1-201ENST00000624115 1537 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 pRNA.6-201ENST00000610482 90 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 pRNA.5-201ENST00000612139 90 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 pRNA.11-201ENST00000618423 90 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 pRNA.13-201ENST00000619112 90 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 AC244015.2-201ENST00000616358 1861 ntBASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CHMP1AQ9HD42 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP1AQ9HD42 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.5
CHMP1AQ9HD42 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CHMP1AQ9HD42 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP1AQ9HD42 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP1AQ9HD42 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP1AQ9HD42 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 AC006455.2-201ENST00000429931 906 ntBASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 AL356740.2-201ENST00000601559 647 ntBASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 OR7E47P-201ENST00000546390 1422 ntBASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms