Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PCDH9Q9HC56 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PCDH9Q9HC56 AC105265.2-201ENST00000467189 838 ntBASIC21.89■■□□□ 1.09
PCDH9Q9HC56 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDH9Q9HC56 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDH9Q9HC56 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 AP004607.7-201ENST00000527152 1677 ntBASIC21.87■■□□□ 1.09
PCDH9Q9HC56 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDH9Q9HC56 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 AC003102.1-202ENST00000563394 1796 ntBASIC21.86■■□□□ 1.09
PCDH9Q9HC56 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDH9Q9HC56 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 MIR572-201ENST00000384983 95 ntBASIC21.85■■□□□ 1.09
PCDH9Q9HC56 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDH9Q9HC56 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.84■■□□□ 1.09
PCDH9Q9HC56 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms