Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 AC233992.3-201ENST00000607491 485 ntBASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.03■■□□□ 1.12
CCHCR1Q8TD31 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.02■■□□□ 1.12
CCHCR1Q8TD31 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CCHCR1Q8TD31 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SLC47A1P1-202ENST00000449666 945 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 AC010141.3-201ENST00000456659 717 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 AC027682.1-201ENST00000562846 899 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 AC142381.2-201ENST00000566120 298 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 AL034346.1-201ENST00000568244 1277 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 AC008764.7-201ENST00000593779 1081 ntBASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCHCR1Q8TD31 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 AC026471.6-201ENST00000622954 1905 ntBASIC22■■□□□ 1.11
CCHCR1Q8TD31 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CCHCR1Q8TD31 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22■■□□□ 1.11
CCHCR1Q8TD31 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22■■□□□ 1.11
CCHCR1Q8TD31 AP001330.3-201ENST00000520123 633 ntBASIC22■■□□□ 1.11
CCHCR1Q8TD31 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCHCR1Q8TD31 RNF165-205ENST00000588679 2904 ntBASIC22■■□□□ 1.11
CCHCR1Q8TD31 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 AF213884.3-201ENST00000563833 479 ntBASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 AL031432.3-201ENST00000607698 485 ntBASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 OXCT2P1-201ENST00000447263 1535 ntBASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.99■■□□□ 1.11
CCHCR1Q8TD31 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 AC091305.1-201ENST00000479476 895 ntBASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 SUDS3P1-201ENST00000505831 966 ntBASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 AC126544.1-201ENST00000580842 1059 ntBASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 AC010525.1-201ENST00000585559 441 ntBASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCHCR1Q8TD31 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 MIR939-201ENST00000401314 82 ntBASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 AC099791.1-201ENST00000416440 715 ntBASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 AL136967.2-201ENST00000623968 743 ntBASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.97■■□□□ 1.11
CCHCR1Q8TD31 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms