Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PNMA6B-201ENST00000538162 1200 ntBASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 MIR4785-201ENST00000585005 73 ntBASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 C2orf69P4-201ENST00000565394 541 ntBASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMC1BQ8NDV3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 AP001412.1-201ENST00000608405 714 ntBASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.41■■□□□ 1.66
SMC1BQ8NDV3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 TSPY15P-201ENST00000457163 923 ntBASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 AL049597.2-201ENST00000565575 961 ntBASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 AL049637.2-201ENST00000641778 930 ntBASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SMC1BQ8NDV3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.39■■□□□ 1.66
SMC1BQ8NDV3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
SMC1BQ8NDV3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
SMC1BQ8NDV3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SMC1BQ8NDV3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 DUSP8P3-201ENST00000399571 1760 ntBASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMC1BQ8NDV3 KRT17P1-201ENST00000399211 1546 ntBASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMC1BQ8NDV3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 AC079630.1-202ENST00000618127 1840 ntBASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
SMC1BQ8NDV3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 AC092368.3-202ENST00000574180 1591 ntBASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC25.35■■□□□ 1.65
SMC1BQ8NDV3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.35■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms