Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VRK3Q8IV63 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VRK3Q8IV63 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 AC104564.3-201ENST00000582367 638 ntBASIC20.79■□□□□ 0.92
VRK3Q8IV63 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VRK3Q8IV63 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.79■□□□□ 0.92
VRK3Q8IV63 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.78■□□□□ 0.92
VRK3Q8IV63 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VRK3Q8IV63 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VRK3Q8IV63 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VRK3Q8IV63 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.77■□□□□ 0.91
VRK3Q8IV63 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VRK3Q8IV63 AC007375.3-201ENST00000600936 2314 ntBASIC20.76■□□□□ 0.91
VRK3Q8IV63 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.76■□□□□ 0.91
VRK3Q8IV63 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.76■□□□□ 0.91
VRK3Q8IV63 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.76■□□□□ 0.91
VRK3Q8IV63 KRT18P61-201ENST00000585825 1298 ntBASIC20.76■□□□□ 0.91
VRK3Q8IV63 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VRK3Q8IV63 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.76■□□□□ 0.91
VRK3Q8IV63 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.75■□□□□ 0.91
VRK3Q8IV63 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.75■□□□□ 0.91
VRK3Q8IV63 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VRK3Q8IV63 KRT87P-202ENST00000534226 1464 ntBASIC20.75■□□□□ 0.91
VRK3Q8IV63 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VRK3Q8IV63 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 Z98882.1-201ENST00000622160 2253 ntBASIC20.74■□□□□ 0.91
VRK3Q8IV63 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 MIR935-201ENST00000401179 91 ntBASIC20.74■□□□□ 0.91
VRK3Q8IV63 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 EEF1DP3-203ENST00000566025 782 ntBASIC20.74■□□□□ 0.91
VRK3Q8IV63 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VRK3Q8IV63 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VRK3Q8IV63 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms