Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 CNN2P6-201ENST00000439038 900 ntBASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
UBE3BQ7Z3V4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
UBE3BQ7Z3V4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 FAM99A-202ENST00000538190 1989 ntBASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 NCF1B-203ENST00000435988 1254 ntBASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 AC104771.1-201ENST00000603335 964 ntBASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 AC231657.2-201ENST00000624556 255 ntBASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC26.57■■□□□ 1.84
UBE3BQ7Z3V4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 AC068473.5-201ENST00000616428 2072 ntBASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 AC007322.1-201ENST00000426983 750 ntBASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
UBE3BQ7Z3V4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 AC010542.4-201ENST00000563151 1910 ntBASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC26.55■■□□□ 1.84
UBE3BQ7Z3V4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 AC005181.1-201ENST00000604782 1256 ntBASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 AC233723.2-201ENST00000623798 2106 ntBASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
UBE3BQ7Z3V4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 SLC7A5P1-201ENST00000568957 537 ntBASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UBE3BQ7Z3V4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 AC008175.2-201ENST00000612840 297 ntBASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 AL109923.1-201ENST00000618799 583 ntBASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC26.52■■□□□ 1.84
UBE3BQ7Z3V4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 AC061975.6-201ENST00000579045 1553 ntBASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
UBE3BQ7Z3V4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 GUSBP5-202ENST00000510805 1989 ntBASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.5■■□□□ 1.83
UBE3BQ7Z3V4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms