Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSPG4Q6UVK1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 AC069236.1-201ENST00000604339 616 ntBASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSPG4Q6UVK1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 ANOS2P-203ENST00000472227 1816 ntBASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSPG4Q6UVK1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 MIR718-201ENST00000390190 70 ntBASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CSPG4Q6UVK1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 AC092068.2-201ENST00000590491 1708 ntBASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 UBE2SP1-201ENST00000450587 669 ntBASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CSPG4Q6UVK1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 EEF1DP3-203ENST00000566025 782 ntBASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 LINC01023-201ENST00000606054 436 ntBASIC17.52■□□□□ 0.39
CSPG4Q6UVK1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 AP004607.7-201ENST00000527152 1677 ntBASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms