Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.57■■□□□ 1.04
CASC4Q6P4E1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CASC4Q6P4E1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 AL136162.1-201ENST00000607711 1078 ntBASIC21.55■■□□□ 1.04
CASC4Q6P4E1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CASC4Q6P4E1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 BX842568.3-201ENST00000418104 571 ntBASIC21.54■■□□□ 1.04
CASC4Q6P4E1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 AC024257.2-201ENST00000549699 147 ntBASIC21.54■■□□□ 1.04
CASC4Q6P4E1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.54■■□□□ 1.04
CASC4Q6P4E1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CASC4Q6P4E1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 AC008406.3-201ENST00000620001 1374 ntBASIC21.52■■□□□ 1.04
CASC4Q6P4E1 AC003102.1-202ENST00000563394 1796 ntBASIC21.52■■□□□ 1.04
CASC4Q6P4E1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 AC126544.1-201ENST00000580842 1059 ntBASIC21.52■■□□□ 1.04
CASC4Q6P4E1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.52■■□□□ 1.04
CASC4Q6P4E1 AC135279.3-201ENST00000610945 1311 ntBASIC21.52■■□□□ 1.03
CASC4Q6P4E1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CASC4Q6P4E1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 AC233992.3-201ENST00000607491 485 ntBASIC21.51■■□□□ 1.03
CASC4Q6P4E1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CASC4Q6P4E1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms