Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC88AQ3V6T2 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.2■■□□□ 1.78
CCDC88AQ3V6T2 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC88AQ3V6T2 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC88AQ3V6T2 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.2■■□□□ 1.78
CCDC88AQ3V6T2 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 FAM197Y4-202ENST00000622692 608 ntBASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC88AQ3V6T2 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CCDC88AQ3V6T2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 AC073912.3-201ENST00000624414 853 ntBASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 NFE2L3P1-201ENST00000588207 1959 ntBASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 SERPINH1P1-201ENST00000419794 1249 ntBASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 MIR4497-201ENST00000583208 89 ntBASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.17■■□□□ 1.78
CCDC88AQ3V6T2 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 MIR1224-201ENST00000408193 85 ntBASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 UBE2SP1-201ENST00000450587 669 ntBASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 AC008694.1-202ENST00000636953 945 ntBASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
CCDC88AQ3V6T2 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 AL034346.1-201ENST00000568244 1277 ntBASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.15■■□□□ 1.78
CCDC88AQ3V6T2 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 AC073648.6-201ENST00000641589 218 ntBASIC26.14■■□□□ 1.78
CCDC88AQ3V6T2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CCDC88AQ3V6T2 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC88AQ3V6T2 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.12■■□□□ 1.77
CCDC88AQ3V6T2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms